WebArguments. A list of vectors of features for expression programs; each entry should be a vector of feature names. List of features to check expression levels against, defaults to rownames (x = object) Number of bins of aggregate expression levels for all analyzed features. Number of control features selected from the same bin per analyzed feature. WebMerge Seurat Objects: MetaFeature: Aggregate expression of multiple features into a single feature: MinMax: Apply a ceiling and floor to all values in a matrix: Misc: Access miscellaneous data: Misc.Seurat: Access miscellaneous data: Misc<-Access miscellaneous data: Misc<-.Seurat: Access miscellaneous data: MixingMetric: Calculates a mixing ...
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WebNov 18, 2024 · AggregateExpression Aggregated feature expression by identity class Description Returns aggregated (summed) expression values for each identity class Usage AggregateExpression( object, assays = NULL, features = NULL, return.seurat = FALSE, group.by = "ident", add.ident = NULL, slot = "data", verbose = TRUE, ... WebNov 23, 2024 · There is very good documentation for 10x Genomics cellranger, the DropSeq Pipeline and the Seurat R package. These tools all have GitHub repositories and the authors are very responsive if you encounter issues. Depending on the technology used to generate the data, you'll need to use either cellranger or DropSeq to process the FASTQ … dowelmax classic 3/8 joining system 2022
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WebNov 18, 2024 · AggregateExpression: Aggregated feature expression by identity class; AnchorSet-class: The AnchorSet Class; AnnotateAnchors: Add info to anchor matrix; … WebMar 27, 2024 · Seurat utilizes R’s plotly graphing library to create interactive plots. This interactive plotting feature works with any ggplot2-based scatter plots (requires a geom_point layer). To use, simply make a ggplot2-based scatter plot (such as DimPlot () or FeaturePlot ()) and pass the resulting plot to HoverLocator () WebApr 15, 2024 · Calculate the average expression levels of each program (cluster) on single cell level, subtracted by the aggregated expression of control feature sets. All analyzed features are binned based on averaged expression, and the control features are randomly selected from each bin. dowelmax classic for sale